yrpD [2018-02-09T07:18:22.000Z]

unknown

locus: BSU26820

pI: 9.96

mw: 24.73 kDa

protein length: 235 aa

gene length: 705 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 6|Groups of genes] → [category|SW 6.12|Secreted proteins]
• [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

Gene

Coordinates: 2,739,486 → 2,740,193

The protein

Paralogous protein(s)

• [protein|258DD30EA27B6A2E81B8359E43203C37F588037A|YncM]

Structure

• [PDB|4HFS] (extracellular portion of [protein|258DD30EA27B6A2E81B8359E43203C37F588037A|YncM], 62% identity)

[SW|Localization]

• extracellular (signal peptide) [Pubmed|18957862]

Expression and Regulation

Operons

• genes: [gene|CB6300378FE7F14A9C7C664A533D73D513857FD7|yrpD]
  description: [pubmed|22383849]

  regulatory mechanism

  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: repression, [Pubmed|20817675], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]

Biological materials

Mutant

• MGNA-A868 (yrpD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/868 NBRP B. subtilis, Japan]
• BKE26820 (Δ[gene|CB6300378FE7F14A9C7C664A533D73D513857FD7|yrpD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE26820 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCATTATTTCCCCCTATC, downstream forward: _UP4_TAAAACATGTTAAACATACA
• BKK26820 (Δ[gene|CB6300378FE7F14A9C7C664A533D73D513857FD7|yrpD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK26820 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCATTATTTCCCCCTATC, downstream forward: _UP4_TAAAACATGTTAAACATACA

References

• 18957862,20817675